The clmorder manual

27 Feb 2006 clmorder 1.006, 06-058

1. |  | NAME
2. |  | SYNOPSIS
3. |  | DESCRIPTION
4. |  | AUTHOR
5. |  | SEE ALSO

## NAME

clmorder - reorder indices to represent blocks from different clusterings.

## SYNOPSIS

clmorder <file name>+

## DESCRIPTION

Given a set of input clusterings, clmorder reorders indices so that the ordering represents blocks from different clusterings (which are preferably more or less hierarchically organized). It puts nodes that share many clusters over the different clusters nearby, and puts nodes in larger clusters earlier in the ordering. It is presumed that the clusterings are successive subclusterings, but it need not be strictly the case - clmorder will convert the input clusterings to a strictly nested sequence.

clmorder interprets its arguments as names of files containing clusterings in mcl format (see mcxio).

## AUTHOR

Stijn van Dongen.

## SEE ALSO

mclfamily for an overview of all the documentation and the utilities in the mcl family.